Pdbe
Server Details
PDBe (Protein Data Bank in Europe, EBI) MCP.
- Status
- Healthy
- Last Tested
- Transport
- Streamable HTTP
- URL
- Repository
- pipeworx-io/mcp-pdbe
- GitHub Stars
- 0
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Usage analytics
See which tools your agents call, how often, and when, so you can understand usage patterns and catch anomalies.
Tool Definition Quality
Average 4.6/5 across 29 of 29 tools scored.
Most tools have distinct purposes, but there is some overlap, particularly between ask_pipeworx and ask_pipeworx_grounded, and among the multiple Polymarket betting tools (bet_research, polymarket_arbitrage, polymarket_edges, polymarket_kalshi_spread). These could cause confusion for an agent.
Tool names are inconsistently styled: some use snake_case (ai_visibility_check, ask_pipeworx), some use camelCase (get_molecules, list_subscriptions), and others use underscores inconsistently. This lack of a predictable pattern hinders quick understanding.
With 29 tools, the set is on the high side. While each tool serves a distinct purpose and the breadth is justified (covering data lookup, betting, memory, subscriptions, etc.), it feels bloated compared to typical well-scoped servers. A slight reduction or better organization could improve coherence.
The tool set covers a wide range of domains (company data, betting, AI visibility, fact-checking, etc.) with good coverage. Minor gaps include the lack of tools for managing user-uploaded data or direct file operations, but the overall surface is quite complete for its stated purpose.
Claim this connector by publishing a /.well-known/glama.json file on your server's domain with the following structure:
{
"$schema": "https://glama.ai/mcp/schemas/connector.json",
"maintainers": [{ "email": "your-email@example.com" }]
}The email address must match the email associated with your Glama account. Once published, Glama will automatically detect and verify the file within a few minutes.
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The connector status is unhealthy when Glama is unable to successfully connect to the server. This can happen for several reasons:
The server is experiencing an outage
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Credentials required to access the server are missing or invalid
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